Fitting Markov property to genetic sequences

Jurgita Židanavičiūtė; Tomas Rekašius

doi:10.15388/LMR.2006.30727

Articles

Jurgita Židanavičiūtė

Vilnius Gediminas Technical University

Tomas Rekašius

Vilnius Gediminas Technical University

Published 2023-09-21

https://doi.org/10.15388/LMR.2006.30727

PDF

Keywords

contingency tables
generalized logit
Markov chains

How to Cite

Židanavičiūtė, J. and Rekašius, T. (2023) “Fitting Markov property to genetic sequences”, Lietuvos matematikos rinkinys, 46(spec.), pp. 280–285. doi:10.15388/LMR.2006.30727.

Download Citation

Abstract

In this paper DNA sequents are modelled as discrete-state Markov chains. Statistical data is presented in contingency tables form. The generalized logit model is used to test the first-order Markov property for all coding and non-coding subsequences of DNA.

PDF

This work is licensed under a Creative Commons Attribution 4.0 International License.

Downloads

Download data is not yet available.

Most read articles by the same author(s)

Marijus Radavičius, Tomas Rekašius, Jurgita Židanavičiūtė, Some mathematical problems in genetics , Lietuvos matematikos rinkinys: Vol. 47 (2007)
Tomas Rekašius, Visualisation of nucleotide sequences , Lietuvos matematikos rinkinys: Vol. 46 (2006)
Marijus Radavičius, Jurgita Židanavičiūtė, Structure learning: some testing problems , Lietuvos matematikos rinkinys: Vol. 45 (2005)
Tomas Rekašius, Research on dependencies in simulated DNA sequences , Lietuvos matematikos rinkinys: Vol. 45 (2005)
Jurgita Židanavičiūtė, Marijus Radavičius, Jurgis Sušinskas, Algirdas Utkus, A comparative analysis of information sources about the prevalence of congenital anomalies of Lithuanian children , Lietuvos matematikos rinkinys: Vol. 43 (2003)
Tomas Rekašius, Albertas Timinskas, Statistical analysis on avoidance of palindromic sequences in genomes of microorganisms , Lietuvos matematikos rinkinys: Vol. 43 (2003)
Rasa Girgždienė, Tomas Rekašius, Statistical modelling of ozone concentration in troposphere , Lietuvos matematikos rinkinys: Vol. 42 (2002)